SuperDSM
stable
  • Quick start
  • Default pipeline
  • SuperDSM API
SuperDSM
  • SuperDSM
  • Edit on GitHub

SuperDSM

SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

Contents

  • Quick start
    • Installation
    • Usage
      • Batch processing
      • Interactive
      • Environment variables
    • References
  • Default pipeline
    • Theory
    • Pipeline stages
    • Inputs and outputs
    • Batch system
  • SuperDSM API
    • superdsm.pipeline
    • superdsm.config
    • superdsm.io
    • superdsm.automation
    • superdsm.image
    • superdsm.dsm
    • superdsm.dsmcfg
    • superdsm.atoms
    • superdsm.objects
    • superdsm.minsetcover
    • superdsm.maxsetpack
    • superdsm.preprocess
    • superdsm.c2freganal
    • superdsm.globalenergymin
    • superdsm.postprocess
    • superdsm.batch
    • superdsm.export
    • superdsm.render
    • superdsm.output
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© Copyright 2017-2024 Leonid Kostrykin, Biomedical Computer Vision Group, Heidelberg University. Revision e1de37a3.

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